ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIRf519
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTATAGCATCATGAGCAATCA miRNA* ACCGCTCATGATGTTATATCG mismatches: 2 bulges: 0 |
pre-miRNA
CAAAAAAGATTGTATAGCATCATGAGCAATCAGCCTTAAACTTTTTAGCAAAATGACCGCTCATGATGTTATATCGTTTCATGA
dot-bracket secondary structure
.......(((.((((((((((((((((..(((...(((((...))))).....)))..)))))))))))))))).)))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAAAAAAGATTGTATAGCATCATGAGCAATCAGCCTTAAACTTTTTAGCAAAATGACCGCTCATGATGTTATATCGTTTCATGA
dot-bracket secondary structure
.......(((.((((((((((((((((..(((...(((((...))))).....)))..)))))))))))))))).)))......
SIMILARITIES| miRBase no hits PMRD ath-miRf11142-akr: 0.000000004 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
