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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002721
species: Theobroma cacao
miRNA family: MIRf519
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTATAGCATCATGAGCAATCA

miRNA*
ACCGCTCATGATGTTATATCG

mismatches: 2
bulges: 0

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pre-miRNA
CAAAAAAGATTGTATAGCATCATGAGCAATCAGCCTTAAACTTTTTAGCAAAATGACCGCTCATGATGTTATATCGTTTCATGA

dot-bracket secondary structure
.......(((.((((((((((((((((..(((...(((((...))))).....)))..)))))))))))))))).)))......


SIMILARITIES
miRBase no hits

PMRD ath-miRf11142-akr: 0.000000004

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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