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Species belonging to selected taxon:

Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002730
species: Theobroma cacao
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGGCTGGCTCGATG

mismatches: 3
bulges: 2
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pre-miRNA
 TTTGTCTTTGAGAGGAATGTTGGCTGGCTCGATGCGGGGGGCTTTGAGAGTGATCAAAGTGAAAGGTATCGGACCAGGCTTCATTCCCCTCAAACATTT

dot-bracket secondary structure
...((.((((((.((((((..((((((.(((((((.....(((((((......))))))).....))))))).))).))).)))))).)))))).))..


SIMILARITIES
miRBase ptc-MIR166f: 0.000000001

PMRD ptc-miR166f: 0.000000001

microPC miR166: 0.00002		UniProt no hits

RFAM mir-166: 0.000001		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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