ABOUT THIS RECORDspecies: Trifolium pratense
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Trifolium pratense Trifolium Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCCCTTCGTCCCAAAATAT miRNA* ATTTAGGGACAGAGGGAGTAA mismatches: 2 bulges: 0 |
pre-miRNA
TGCAGTATGGAACTCCCTTCGTCCCAAAATATAAATAAAAAGTGGTCAATCAAAGTGGATGTATTTAGGGACAGAGGGAGTAATGCAGCAT
dot-bracket secondary structure
(((.((((...((((((((.(((((.(((((((..((.....(((....)))...))..))))))).))))).)))))))).)))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCAGTATGGAACTCCCTTCGTCCCAAAATATAAATAAAAAGTGGTCAATCAAAGTGGATGTATTTAGGGACAGAGGGAGTAATGCAGCAT
dot-bracket secondary structure
(((.((((...((((((((.(((((.(((((((..((.....(((....)))...))..))))))).))))).)))))))).)))).))).
SIMILARITIES| miRBase no hits PMRD osa-miRf11624-akr: 0.00007 microPC no hits | UniProt no hits RFAM MIR1122: 0.00002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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