ABOUT THIS RECORDspecies: Trifolium pratense
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Trifolium pratense Trifolium Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCTTCTTCTTCCTCTTCAT miRNA* GTTGAGGGAGAAGGCCGACTTG mismatches: 5 bulges: 1 |
pre-miRNA
TGCATCTCTTAACTCTTCTTCTTCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCCTCTTCTCCTTTCATCACTCCA
ATTTTGAGAGAAGAAATGGGAAAGGGTTATGAAGAAGCAATTCAAGAACTCGAGAAATTGTTGAGGGAGAAGGCCGACTTGAAAGCCAC
dot-bracket secondary structure
.....((.((((.((.(((((((((((..((..((((...(((..((.((((....)))).))...((...(((((((.((...(((((((.((.(((((
....)).)))..)).....)))))))....)).)))))))..)).)))....))))..))..)))))))))))..)).)))).))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGCATCTCTTAACTCTTCTTCTTCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCCTCTTCTCCTTTCATCACTCCA
ATTTTGAGAGAAGAAATGGGAAAGGGTTATGAAGAAGCAATTCAAGAACTCGAGAAATTGTTGAGGGAGAAGGCCGACTTGAAAGCCAC
dot-bracket secondary structure
.....((.((((.((.(((((((((((..((..((((...(((..((.((((....)))).))...((...(((((((.((...(((((((.((.(((((
....)).)))..)).....)))))))....)).)))))))..)).)))....))))..))..)))))))))))..)).)))).))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P17067|CAHC_PEA: 2e-19 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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