ABOUT THIS RECORDspecies: Triphysaria pusilla
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTCTTCCTCTTCCTCTTCAT miRNA* GGACACAATGGGAACAAGTG mismatches: 5 bulges: 1 |
pre-miRNA
TGCATCAGCAAATGGACACAATGGGAACAAGTGAAAATAAAGAATTCAATTACGAGTGCGAAAAGTCATAGCCACCGCCCTGGCGTTCATTTCGGCCATT
TGCATCTGAAACTGAAGAATCGCCATTTGATCCATCGCCTTGAGATTCGCCATTTGTAACTTCCTCACTTCTGATAATTCCCCATGATCTTCTTCCTCTT
CCTCTTCATTATCTTCTTC
dot-bracket secondary structure
(((....)))((((((...((.(((((.(((..........(((((..((((.(((((....((((.(((((....))..(((((...((((((((....
((.(((......(((....)))......))).))..)))..))))).)))))..))).))))...))))).)))))))))........))).))))).))
....)))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGCATCAGCAAATGGACACAATGGGAACAAGTGAAAATAAAGAATTCAATTACGAGTGCGAAAAGTCATAGCCACCGCCCTGGCGTTCATTTCGGCCATT
TGCATCTGAAACTGAAGAATCGCCATTTGATCCATCGCCTTGAGATTCGCCATTTGTAACTTCCTCACTTCTGATAATTCCCCATGATCTTCTTCCTCTT
CCTCTTCATTATCTTCTTC
dot-bracket secondary structure
(((....)))((((((...((.(((((.(((..........(((((..((((.(((((....((((.(((((....))..(((((...((((((((....
((.(((......(((....)))......))).))..)))..))))).)))))..))).))))...))))).)))))))))........))).))))).))
....)))))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
