miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor



ABOUT THIS RECORD

ID: MNEST002764
species: Triphysaria pusilla
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTCTTCCTCTTCCTCTTCAT

miRNA*
GGACACAATGGGAACAAGTG

mismatches: 5
bulges: 1

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pre-miRNA
TGCATCAGCAAATGGACACAATGGGAACAAGTGAAAATAAAGAATTCAATTACGAGTGCGAAAAGTCATAGCCACCGCCCTGGCGTTCATTTCGGCCATT
TGCATCTGAAACTGAAGAATCGCCATTTGATCCATCGCCTTGAGATTCGCCATTTGTAACTTCCTCACTTCTGATAATTCCCCATGATCTTCTTCCTCTT
CCTCTTCAT
TATCTTCTTC


dot-bracket secondary structure
(((....)))((((((...((.(((((.(((..........(((((..((((.(((((....((((.(((((....))..(((((...((((((((....
((.(((......(((....)))......))).))..)))..))))).)))))..))).))))...))))).)))))))))........))).))))).))
....)))))
).........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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