miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST002766
species: Triphysaria pusilla
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTACTCCCTCCGTCCCAAA

miRNA*
 TGGGACCGAGGGAGTATTATA

mismatches: 3
bulges: 0
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pre-miRNA
 AAATGATTATGTTTTACTCCCTCCGTCCCAAAATGATTTTCCACTTTGCTATTAAATTTTATAGCAAAGTAGACAATCATTTTGGGACCGAGGGAGTATT
ATATATGGAAT

dot-bracket secondary structure
.......(((((..(((((((((.((((((((((((((.((.((((((((((........)))))))))).)).)))))))))))))).)))))))))..
)))))......


SIMILARITIES
miRBase tae-MIR1122: 0.0003

PMRD osa-miRf10569-akr: 0.00008

microPC miR1439: 0.0003		UniProt no hits

RFAM MIR1122: 0.0004		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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Liczniki na strone;