miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor



ABOUT THIS RECORD

ID: MNEST002777
species: Triphysaria versicolor
miRNA family: miR2864.1
source: miRNEST

Taxonomy by NCBI:
Triphysaria versicolor Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTGCTGCCCTTGTTTTTAA

miRNA*
 AAAAGCAGAGGCGGCAAGACC

mismatches: 3
bulges: 0
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pre-miRNA
 AGCCATGTAGATTTTGCTGCCCTTGTTTTTAATACTTACCACTTGCTTTATCATATTCTTAGCCGACAAAGACTTTAGGGCTTTGGTGCACATATTATCT
GGAATTCTGGATTCTCTTTTGATATCTCTTAACAAGATGCCTGAATCCCCTGTGTTCTTGATCAATCTGAGGATTGTGCTTTCGGCATCTCCGACCGGGC
CGGGCAGTTGGGTTTCGGGTCTTTTCCTCTTAAGGAGGGAGGGATTGACAGGTGGTCGACTCATTCCGATATGTTGGTTGATCAGAAAAGCAGAGGCGGC
AAGACCGGACGTAC

dot-bracket secondary structure
....((((...((((((((((.((((((((.......((((...((..((((..((((((((..(((((.(((..(((((.(((((.(((.((((((...
((((((...))))))....)))))).((((...))))))))))))..))))).))).))).))...))))))))..((((..((((............))
))))))..(((((((((.(((..((((((((.....))))))))..)))...)))..))))))....)))).)))))).......)))))))).))))))
))))....))))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|O94553|RPC6_SCHPO: 0.00005

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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