miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Actinidia chinensis
,
Actinidia deliciosa
,
Actinidia eriantha
,
Antirrhinum majus
,
Barnadesia spinosa
,
Cichorium intybus
,
Coffea canephora
,
Fraxinus excelsior
,
Gerbera hybrid cultivar
,
Guizotia abyssinica
,
Helianthus argophyllus
,
Helianthus ciliaris
,
Helianthus exilis
,
Helianthus paradoxus
,
Helianthus petiolaris
,
Helianthus tuberosus
,
Ipomoea batatas
,
Lactuca perennis
,
Lactuca saligna
,
Lactuca sativa
,
Lactuca serriola
,
Lactuca virosa
,
Mimulus guttatus
,
Mimulus guttatus var. nasutus
,
Mimulus lewisii
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Ocimum basilicum
,
Panax ginseng
,
Parthenium argentatum
,
Petunia axillaris subsp. axillaris
,
Salvia miltiorrhiza
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Striga hermonthica
,
Taraxacum kok-saghyz
,
Taraxacum officinale
,
Triphysaria pusilla
,
Triphysaria versicolor
,
Zinnia violacea
,
Capsicum annuum
,
Carthamus tinctorius
,
Catharanthus roseus
,
Centaurea maculosa
,
Centaurea solstitialis
,
Cichorium endivia
,
Artemisia annua
,
Helianthus annuus
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST002777
species:
Triphysaria versicolor
miRNA family:
miR2864.1
source:
miRNEST
Taxonomy by NCBI:
Triphysaria versicolor
Triphysaria
Rhinantheae
Orobanchaceae
Lamiales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTTGCTGCCCTTGTTTTTAA
miRNA*
AAAAGCAGAGGCGGCAAGACC
mismatches:
3
bulges:
0
View larger
pre-miRNA
AGCCATGTAGA
TTTTGCTGCCCTTGTTTTTAA
TACTTACCACTTGCTTTATCATATTCTTAGCCGACAAAGACTTTAGGGCTTTGGTGCACATATTATCT
GGAATTCTGGATTCTCTTTTGATATCTCTTAACAAGATGCCTGAATCCCCTGTGTTCTTGATCAATCTGAGGATTGTGCTTTCGGCATCTCCGACCGGGC
CGGGCAGTTGGGTTTCGGGTCTTTTCCTCTTAAGGAGGGAGGGATTGACAGGTGGTCGACTCATTCCGATATGTTGGTTGATCAG
AAAAGCAGAGGCGGC
AAGACC
GGACGTAC
dot-bracket secondary structure
....((((...
((((((((((.((((((((..
.....((((...((..((((..((((((((..(((((.(((..(((((.(((((.(((.((((((...
((((((...))))))....)))))).((((...))))))))))))..))))).))).))).))...))))))))..((((..((((............))
))))))..(((((((((.(((..((((((((.....))))))))..)))...)))..))))))....)))).)))))).......
)))))))).))))))
))))..
..))))..
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|O94553|RPC6_SCHPO: 0.00005
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record