ABOUT THIS RECORDspecies: Volvox carteri
miRNA family: MIRf160
source: miRNEST
Taxonomy by NCBI:
Volvox carteri Volvox Volvocaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCAGCAGCAGCAGCTGCAG miRNA* GCAGCAGCAGCAGCAGCAGCA mismatches: 5 bulges: 0 |
pre-miRNA
TCATGCCGTGCCCATGGCCGTGTAACTGCCTGGGATTCTGGCCGCGTGCTCTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCAGC
AGCTGCAGCCCCCTGCCTTTGCGACTGTGGTTGTTGTGTCTGTGGTAGTGGTTGCGGCGCCCAGGGC
dot-bracket secondary structure
.........((((...((((((..((((((..((((..(((((((.(((...(((((..((.(((((.((.((.((.(((((....))))).)).)).))
.))))).))...)))))...)))...)))))))....))))..))))))...)))))).....))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCATGCCGTGCCCATGGCCGTGTAACTGCCTGGGATTCTGGCCGCGTGCTCTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCAGCAGC
AGCTGCAGCCCCCTGCCTTTGCGACTGTGGTTGTTGTGTCTGTGGTAGTGGTTGCGGCGCCCAGGGC
dot-bracket secondary structure
.........((((...((((((..((((((..((((..(((((((.(((...(((((..((.(((((.((.((.((.(((((....))))).)).)).))
.))))).))...)))))...)))...)))))))....))))..))))))...)))))).....))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
