miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Homo sapiens, Pongo abelii, Pan troglodytes verus



ABOUT THIS RECORD

ID: MNEST028623
species: Homo sapiens
source: miRBase, original name: hsa-mir-378b (MI0014154)

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACTGGACTTGGAGGCAGAA

miRNA*
GAGTCTTCAAGGCTAGTGG

mismatches: 3
bulges: 0

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pre-miRNA
GGTCATTGAGTCTTCAAGGCTAGTGGAAAGAGCACTGGACTTGGAGGCAGAAAGACC

dot-bracket secondary structure
((((.((..(((((((((.((((((.......)))))).)))))))))..)).))))


SIMILARITIES
miRBase ssc-mir-378-2: 0.000009

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK, PLoS One. 5:e9685(2010)., "Characterization of the Melanoma miRNAome by Deep Sequencing"




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