ABOUT THIS RECORDspecies: Homo sapiens
source: miRBase, original name: hsa-mir-378b (MI0014154)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTGGACTTGGAGGCAGAA miRNA* GAGTCTTCAAGGCTAGTGG mismatches: 3 bulges: 0 |
pre-miRNA
GGTCATTGAGTCTTCAAGGCTAGTGGAAAGAGCACTGGACTTGGAGGCAGAAAGACC
dot-bracket secondary structure
((((.((..(((((((((.((((((.......)))))).)))))))))..)).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK, PLoS One. 5:e9685(2010)., "Characterization of the Melanoma miRNAome by Deep Sequencing"
GGTCATTGAGTCTTCAAGGCTAGTGGAAAGAGCACTGGACTTGGAGGCAGAAAGACC
dot-bracket secondary structure
((((.((..(((((((((.((((((.......)))))).)))))))))..)).))))
SIMILARITIES| miRBase ssc-mir-378-2: 0.000009 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK, PLoS One. 5:e9685(2010)., "Characterization of the Melanoma miRNAome by Deep Sequencing"
