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Species belonging to selected taxon:
Mus musculus
,
Sus scrofa
,
Bos taurus
,
Rattus norvegicus
,
Canis lupus familiaris
,
Ovis aries
,
Macaca fascicularis
,
Papio anubis
,
Homo sapiens
,
Peromyscus maniculatus bairdii
,
Pongo abelii
,
Ursus americanus
,
Equus caballus
,
Oryctolagus cuniculus
,
Macaca nemestrina
,
Cavia porcellus
,
Bos indicus
,
Bos sp.
,
Peromyscus polionotus subgriseus
,
Capra hircus
,
Pan troglodytes verus
,
Macaca mulatta
ABOUT THIS RECORD
ID:
MNEST028828
species:
Homo sapiens
miRNA family:
mir-548
source:
miRBase, original name:
hsa-mir-548f-4
(
MI0006377
)
Taxonomy by NCBI:
Homo sapiens
Homo
Homininae
Hominidae
Hominoidea
Catarrhini
Simiiformes
Haplorrhini
Primates
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAAAACTGTAATTACTTTT
miRNA*
AAGTAATAGTGGTTTTTGC
mismatches:
3
bulges:
0
View larger
pre-miRNA
GAGTTCTAACGTATTAGGTTGGTGCAA
AAGTAATAGTGGTTTTTGC
CATTAAAAGTAATGAC
AAAAACTGTAATTACTTTT
GGAACAATATTAATAGAAT
TTCAG
dot-bracket secondary structure
((((((((...((....((((.(.(((
(((((((.(..(((((((.
(((((....))))).)
))))))..).)))))))))
).).))))..)).))))))
))...
SIMILARITIES
miRBase
hsa-mir-548h-2
:
2e-20
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-548: 7e-24
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA,
Genome Res. 18:610-621(2008).
,
"Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"