miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST028828
species: Homo sapiens
miRNA family: mir-548
source: miRBase, original name: hsa-mir-548f-4 (MI0006377)

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAAAACTGTAATTACTTTT

miRNA*
 AAGTAATAGTGGTTTTTGC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GAGTTCTAACGTATTAGGTTGGTGCAAAAGTAATAGTGGTTTTTGCCATTAAAAGTAATGACAAAAACTGTAATTACTTTTGGAACAATATTAATAGAAT
TTCAG

dot-bracket secondary structure
((((((((...((....((((.(.((((((((((.(..(((((((.(((((....))))).)))))))..).)))))))))).).))))..)).))))))
))...


SIMILARITIES
miRBase hsa-mir-548h-2: 2e-20

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-548: 7e-24

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"



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