ABOUT THIS RECORDspecies: Centaurea maculosa
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* AGTGATACTAAGAACACATG mismatches: 2 bulges: 2 |
pre-miRNA
ACAGAACAGGGCAATTCTCCAAGGAGTGATACTAAGAACACATGTGATGGAATGAGTGCATTGATATGCTGTATGGTACAACTCTTTGATGCACATTTTT
TTTCATTTGTGTTCTCAGGTCACCCCTTTGGAGCACCCTGTTTCATAATGTACAACT
dot-bracket secondary structure
...((((((((.....((((((((.(((((.((.((((((((.((((.((((...(((((((((.....((((...)))).....)))))))))...)))
).)))).)))))))).)))))))..))))))))..))))))))..............
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACAGAACAGGGCAATTCTCCAAGGAGTGATACTAAGAACACATGTGATGGAATGAGTGCATTGATATGCTGTATGGTACAACTCTTTGATGCACATTTTT
TTTCATTTGTGTTCTCAGGTCACCCCTTTGGAGCACCCTGTTTCATAATGTACAACT
dot-bracket secondary structure
...((((((((.....((((((((.(((((.((.((((((((.((((.((((...(((((((((.....((((...)))).....)))))))))...)))
).)))).)))))))).)))))))..))))))))..))))))))..............
SIMILARITIES| miRBase vvi-MIR398a: 0.000000008 PMRD vvi-miR398a: 0.000000008 microPC miR398: 1e-41 | UniProt no hits RFAM MIR398: 0.0000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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