ABOUT THIS RECORDspecies: Centaurea solstitialis
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCTTCTTCCCTGGCT miRNA* ACAGGGACGAGACGGAGCCCG mismatches: 5 bulges: 0 |
pre-miRNA
TTTAATGGTATAGATGGAGATGTGAGGGTAGACAGGGACGAGACGGAGCCCGAAAAAGCCTAGTCAATACTTGGGTCAGTATTGTTGTCTTTTCATGCAC
TGCTTCTTCCCTGGCTATCCTCTTCTCTCTATACTCGTGTTGTT
dot-bracket secondary structure
......((((((((..((((...((((((((.((((((.(((.(((.((..(((((.((.....(((((((......)))))))..)).)))))..)).)
)).))).)))))).)))))))).)))))))))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTAATGGTATAGATGGAGATGTGAGGGTAGACAGGGACGAGACGGAGCCCGAAAAAGCCTAGTCAATACTTGGGTCAGTATTGTTGTCTTTTCATGCAC
TGCTTCTTCCCTGGCTATCCTCTTCTCTCTATACTCGTGTTGTT
dot-bracket secondary structure
......((((((((..((((...((((((((.((((((.(((.(((.((..(((((.((.....(((((((......)))))))..)).)))))..)).)
)).))).)))))).)))))))).)))))))))))).........
SIMILARITIES| miRBase aqc-MIR408: 0.0001 PMRD aqc-miR408: 0.0001 microPC miR408: 0.0004 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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