ABOUT THIS RECORDspecies: Allium cepa
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCTCTTCCACTTCGA miRNA* GGACACGGGGAGTGAAGAGGGA mismatches: 3 bulges: 1 |
pre-miRNA
GTCGGGCATGTCGGACACGGGGAGTGAAGAGGGATCCTTAGCAACTGAAACAAACCAACATGGATCATCTCAAGATCCGGACACTGTTGCTGCTGCTGCT
TCTTCTTCCTCTGCTGCTGCTGCTGCTGCAAAGAAGAGATCAACTAGGATTGTAACCAAGACAAAGCAGTACAGCAAAGCACAACCTCTTCCTCTTCCAC
TTCGAAATAAGAAC
dot-bracket secondary structure
.((.......(((((...((((((.(((((((....(((((((((...............((((((.......))))))......))))))(((((((((
(((((((....(((.((.......)).)))))))))).(((......)))(((.......))).))))))..))).))).....)))))))))))))...
))))).....))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GTCGGGCATGTCGGACACGGGGAGTGAAGAGGGATCCTTAGCAACTGAAACAAACCAACATGGATCATCTCAAGATCCGGACACTGTTGCTGCTGCTGCT
TCTTCTTCCTCTGCTGCTGCTGCTGCTGCAAAGAAGAGATCAACTAGGATTGTAACCAAGACAAAGCAGTACAGCAAAGCACAACCTCTTCCTCTTCCAC
TTCGAAATAAGAAC
dot-bracket secondary structure
.((.......(((((...((((((.(((((((....(((((((((...............((((((.......))))))......))))))(((((((((
(((((((....(((.((.......)).)))))))))).(((......)))(((.......))).))))))..))).))).....)))))))))))))...
))))).....))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
