miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Allium cepa



ABOUT THIS RECORD

ID: MNEST000030
species: Allium cepa
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCTCTTCCTCTTCCACTTCGA

miRNA*
GGACACGGGGAGTGAAGAGGGA

mismatches: 3
bulges: 1

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pre-miRNA
GTCGGGCATGTCGGACACGGGGAGTGAAGAGGGATCCTTAGCAACTGAAACAAACCAACATGGATCATCTCAAGATCCGGACACTGTTGCTGCTGCTGCT
TCTTCTTCCTCTGCTGCTGCTGCTGCTGCAAAGAAGAGATCAACTAGGATTGTAACCAAGACAAAGCAGTACAGCAAAGCACAACCTCTTCCTCTTCCAC
TTCGA
AATAAGAAC


dot-bracket secondary structure
.((.......(((((...((((((.(((((((....(((((((((...............((((((.......))))))......))))))(((((((((
(((((((....(((.((.......)).)))))))))).(((......)))(((.......))).))))))..))).))).....)))))))))))))...
)))))
.....))..



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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