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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST003044
species: Brachypodium distachyon
miRNA family: MIRf1205
source: miRNEST

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGAGCATGGATGGAGCGG

miRNA*
 GTTTATCTTGTTCTTCATT

mismatches: 2
bulges: 2
View larger
pre-miRNA
 AGATTATGCTGACTTCATATCTGTTTATCTTGTTCTTCATTCTGCCAATGCCAAGGATGTGGAGGTGGTTTTCACGTTTACTTTACTTGACAAGGCTGGA
GAACTAGTCCCTTCTTACAGCCGAACCATGGCCGGGCATACCTTCGCAAAGAAAGGTTCATCTGGGGGATACCATGATTTTATCAAGAAGGTGGATTTAG
AGGGATCACTTTATTTAAGGGATGATGATAGTTTCAGCTTCAGATGCGATGTCAACGTACTGAAGCATAATCAGCAGAAATGCGACCAGCCTGTTGTAAT
ACCCCCAAGCAACTTGTGTCGGCATCTCAAAGACCTCCTGGAGAGCATGGATGGAGCGGATGTGATCTTTCATGTAGG

dot-bracket secondary structure
......((((((..((((((((((((.((.(((((((((.((((((...((((.((.(((.(((..(((..........)))...))).))).(((((((
(((........))))).)))))...)).))))..))).(((((((.....((.(((.(((..(((......)))))).))).))..)))))))(((((..
..))))).((((....))))..((.((((.((....(((((((.((((.......))))))))))))).)))).))((.(((((((..((..(((((...
........)))))..))))).)))).))..))).....))))))))).))...))))))))))))....))).)))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|O22286|BPM3_ARATH: 0.00000000001

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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