miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brachypodium distachyon



ABOUT THIS RECORD

ID: MNEST003044
species: Brachypodium distachyon
miRNA family: MIRf1205
source: miRNEST

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGAGCATGGATGGAGCGG

miRNA*
GTTTATCTTGTTCTTCATT

mismatches: 2
bulges: 2

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pre-miRNA
AGATTATGCTGACTTCATATCTGTTTATCTTGTTCTTCATTCTGCCAATGCCAAGGATGTGGAGGTGGTTTTCACGTTTACTTTACTTGACAAGGCTGGA
GAACTAGTCCCTTCTTACAGCCGAACCATGGCCGGGCATACCTTCGCAAAGAAAGGTTCATCTGGGGGATACCATGATTTTATCAAGAAGGTGGATTTAG
AGGGATCACTTTATTTAAGGGATGATGATAGTTTCAGCTTCAGATGCGATGTCAACGTACTGAAGCATAATCAGCAGAAATGCGACCAGCCTGTTGTAAT
ACCCCCAAGCAACTTGTGTCGGCATCTCAAAGACCTCCTGGAGAGCATGGATGGAGCGGATGTGATCTTTCATGTAGG


dot-bracket secondary structure
......((((((..((((((((((((.((.(((((((((.((((((...((((.((.(((.(((..(((..........)))...))).))).(((((((
(((........))))).)))))...)).))))..))).(((((((.....((.(((.(((..(((......)))))).))).))..)))))))(((((..
..))))).((((....))))..((.((((.((....(((((((.((((.......))))))))))))).)))).))((.(((((((..((..(((((...
........)))))..))))).)))).))..))).....))))))))).))...))))))))))))....))).)))..



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|O22286|BPM3_ARATH: 0.00000000001

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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