ABOUT THIS RECORDspecies: Citrus clementina
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Citrus clementina Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCGTCCTCTTCCTCTTCCT miRNA* AAAGAGAGAGAAGAAAGAGTCT mismatches: 4 bulges: 1 |
pre-miRNA
AAGAGAGAAAAAGAAAGAGAGAGAAGAAAGAGTCTCATCAACATCAATCATCACCATCAGCTTCCTCAATCAACGTCAGCATCAGCATCACTACCATCAG
CACCTGCGCCTGGATGTAAGTTAAGTTGGATGATCATCGTCGTCATAACGTCAACAACAAATCAGTAGTAATGGCAGGACTAATATACGAAATATTCACA
TCGTCATCGCTACTATCACTGGGCCTCTACCACACGATCTGCACGACGCGCAACTACCTGAAATCACCGCAATCGTACGGCGCCAAACCCTACCACCCAC
TCCCACTCCATCACAGCCACCACCGCCTCAAGCACCTCCAGCTGTACCTGATAATCGTCTGCCTCCTCATCTCCTTCGTCCACCAAATCCTAACCGCATC
CGACTCCGACCCGCTCGTCAAGGGCCGGACCCCCGTCCACCTCTTCGCCTCCCTCCAGTCCGCACTCGTCCTCTTCCTCTTCCTCTTCCTCTCCCTCTCC
CTC
dot-bracket secondary structure
..(((((.((.((.(((((.((((.((..((((...((((......((.((((...(((((((....(((..(((((.(((...((.............)
)...))).....)))))..)))))))))).)))).))((((((((...(((..........(((((.(((.((((..(((.(((((.....)))))....
..)))...)))).))).)))))...........)))...)).)))))).((.................))....(((((((...................
........................................))))))).))))..(((..(((.................................)))..
)))....(((......((.(((((..((((....))))..))))).)).........)))...)))).)).)))).))))).)).)).))))).......
...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AAGAGAGAAAAAGAAAGAGAGAGAAGAAAGAGTCTCATCAACATCAATCATCACCATCAGCTTCCTCAATCAACGTCAGCATCAGCATCACTACCATCAG
CACCTGCGCCTGGATGTAAGTTAAGTTGGATGATCATCGTCGTCATAACGTCAACAACAAATCAGTAGTAATGGCAGGACTAATATACGAAATATTCACA
TCGTCATCGCTACTATCACTGGGCCTCTACCACACGATCTGCACGACGCGCAACTACCTGAAATCACCGCAATCGTACGGCGCCAAACCCTACCACCCAC
TCCCACTCCATCACAGCCACCACCGCCTCAAGCACCTCCAGCTGTACCTGATAATCGTCTGCCTCCTCATCTCCTTCGTCCACCAAATCCTAACCGCATC
CGACTCCGACCCGCTCGTCAAGGGCCGGACCCCCGTCCACCTCTTCGCCTCCCTCCAGTCCGCACTCGTCCTCTTCCTCTTCCTCTTCCTCTCCCTCTCC
CTC
dot-bracket secondary structure
..(((((.((.((.(((((.((((.((..((((...((((......((.((((...(((((((....(((..(((((.(((...((.............)
)...))).....)))))..)))))))))).)))).))((((((((...(((..........(((((.(((.((((..(((.(((((.....)))))....
..)))...)))).))).)))))...........)))...)).)))))).((.................))....(((((((...................
........................................))))))).))))..(((..(((.................................)))..
)))....(((......((.(((((..((((....))))..))))).)).........)))...)))).)).)))).))))).)).)).))))).......
...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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