miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Paullinia cupana var. sorbilis, Citrus clementina



ABOUT THIS RECORD

ID: MNEST003138
species: Citrus clementina
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Citrus clementina Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACTCGTCCTCTTCCTCTTCCT

miRNA*
AAAGAGAGAGAAGAAAGAGTCT

mismatches: 4
bulges: 1

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pre-miRNA
AAGAGAGAAAAAGAAAGAGAGAGAAGAAAGAGTCTCATCAACATCAATCATCACCATCAGCTTCCTCAATCAACGTCAGCATCAGCATCACTACCATCAG
CACCTGCGCCTGGATGTAAGTTAAGTTGGATGATCATCGTCGTCATAACGTCAACAACAAATCAGTAGTAATGGCAGGACTAATATACGAAATATTCACA
TCGTCATCGCTACTATCACTGGGCCTCTACCACACGATCTGCACGACGCGCAACTACCTGAAATCACCGCAATCGTACGGCGCCAAACCCTACCACCCAC
TCCCACTCCATCACAGCCACCACCGCCTCAAGCACCTCCAGCTGTACCTGATAATCGTCTGCCTCCTCATCTCCTTCGTCCACCAAATCCTAACCGCATC
CGACTCCGACCCGCTCGTCAAGGGCCGGACCCCCGTCCACCTCTTCGCCTCCCTCCAGTCCGCACTCGTCCTCTTCCTCTTCCTCTTCCTCTCCCTCTCC
CTC


dot-bracket secondary structure
..(((((.((.((.(((((.((((.((..((((...((((......((.((((...(((((((....(((..(((((.(((...((.............)
)...))).....)))))..)))))))))).)))).))((((((((...(((..........(((((.(((.((((..(((.(((((.....)))))....
..)))...)))).))).)))))...........)))...)).)))))).((.................))....(((((((...................
........................................))))))).))))..(((..(((.................................)))..
)))....(((......((.(((((..((((....))))..))))).)).........)))...)))).)).)))).))))).)).)).))))).......
...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





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