ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-1905
source: miRBase, original name: mmu-mir-1905 (MI0008315)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACCAGTCCCACCACGCGGTAG miRNA* GCTGCTGGATGCGTTTGATGGT mismatches: 3 bulges: 2 |
pre-miRNA
GTGTTGGTCTGCTGCTGGATGCGTTTGATGGTCGCTCCCTTGGGGCCCACCACCAGTCCCACCACGCGGTAGGGTACTCGTA
dot-bracket secondary structure
(.((.(.(((((((((((.((.(.(((.((((.(((((...)))))..)))).))).).))))).)))))))).))).)...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR
references
[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"
GTGTTGGTCTGCTGCTGGATGCGTTTGATGGTCGCTCCCTTGGGGCCCACCACCAGTCCCACCACGCGGTAGGGTACTCGTA
dot-bracket secondary structure
(.((.(.(((((((((((.((.(.(((.((((.(((((...)))))..)))).))).).))))).)))))))).))).)...
SIMILARITIES| miRBase eca-mir-1905c: 1e-18 PMRD no hits microPC no hits | UniProt sp|A1L020|MEX3A_HUMAN: 0.0000001 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR
references
[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"
