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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000329
species: Brassica rapa
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGTGCCAATATCACG

miRNA*
 AGATATTAGTGCGGTTCAATC

mismatches: 2
bulges: 0
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pre-miRNA
 ATCAAGCGAGATATTAGTGCGGTTCAATCAAATAGTCTCACTCTTAGTTGATAGAGATTGATTTTGTTCGATTGAGCCGTGCCAATATCACGCATA

dot-bracket secondary structure
)....(((.((((((.(((((((((((((.(((((..(((.((((........)))).)))..))))).))))))))))))).)))))).)))...


SIMILARITIES
miRBase bra-MIR171b: 5.0E-49

PMRD bra-miR171b: 5.0E-49

microPC miR171: 3.0E-7		UniProt no hits

RFAM 1MIR171_1: 6.0E-15		most similar mature miRNAs

Identical with: bna-miR171a from PMRD (MNEST048363), bra-miR171b from PMRD , bra-MIR171b from miRBase , bna-MIR171a from miRBase

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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