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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000329
species: Brassica rapa
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGTGCCAATATCACG

miRNA*
 AGATATTAGTGCGGTTCAATC

mismatches: 2
bulges: 0
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pre-miRNA
 TCAAGCGAGATATTAGTGCGGTTCAATCAAATAGTCTCACTCTTAGTTGATAGAGATTGATTTTGTTCGATTGAGCCGTGCCAATATCACGCATA

dot-bracket secondary structure
....(((.((((((.(((((((((((((.(((((..(((.((((........)))).)))..))))).))))))))))))).)))))).)))...


SIMILARITIES
miRBase bra-MIR171b: 5e-49

PMRD bra-miR171b: 5e-49

microPC miR171: 0.0000003		UniProt no hits

RFAM MIR171_1: 0.000000000000006		most similar mature miRNAs

Identical with: bna-miR171a from PMRD (MNEST048363)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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