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Species belonging to selected taxon:

Arabidopsis thaliana



ABOUT THIS RECORD

ID: MNEST003334
species: Arabidopsis thaliana
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTA

miRNA*
 GATCATGTTCGCAGTTTCACC

mismatches: 1
bulges: 0
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pre-miRNA
 CCGGCATCTGATGAAGCTGCCAGCATGATCTAATTAGCTTTCTTTATCCTTTGTTGTGTTTCATGACGATGGTTAAGAGATCAGTCTCGATTAGATCATG
TTCGCAGTTTCACCCGTTGACT

dot-bracket secondary structure
.(((...))).(((((((((.((((((((((((((.(((.(((((..((.((((((((...)))))))).))...)))))..)))...))))))))))))
)).)))))))))..........


SIMILARITIES
miRBase ath-MIR167a: 5e-65

PMRD ath-miR167a: 5e-65

microPC miR167: 2e-52		UniProt no hits

RFAM MIR167_1: 9e-64		most similar mature miRNAs

Identical with: ath-MIR167a from miRBase (MNEST040039)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence




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