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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST003334
species: Arabidopsis thaliana
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTA

miRNA*
 GATCATGTTCGCAGTTTCACC

mismatches: 1
bulges: 0
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pre-miRNA
 CCGGCATCTGATGAAGCTGCCAGCATGATCTAATTAGCTTTCTTTATCCTTTGTTGTGTTTCATGACGATGGTTAAGAGATCAGTCTCGATTAGATCATG
TTCGCAGTTTCACCCGTTGACT

dot-bracket secondary structure
.(((...))).(((((((((.((((((((((((((.(((.(((((..((.((((((((...)))))))).))...)))))..)))...))))))))))))
)).)))))))))..........


SIMILARITIES
miRBase ath-MIR167a: 5e-65

PMRD ath-miR167a: 5e-65

microPC miR167: 2e-52		UniProt no hits

RFAM MIR167_1: 9e-64		most similar mature miRNAs

Identical with: ath-MIR167a from miRBase (MNEST040039)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence




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