ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGATGCAGCGGTTCATCGATC mismatches: 2 bulges: 0 |
pre-miRNA
CTAGAGGGACACTGGATGCAGCGGTTCATCGATCTGTTCCCTAGGCCTGATGATGAATGAGTTATAGAATCTTAAGGAAAAAAAATCGAAGGTAGGAGATA
GAGAGAGAAGAGAGAGGCAAAAGGAATCGGTCGATAAACCTCTGCATCCAGCGTTCACCC
dot-bracket secondary structure
).....((((.((((((((((.((((.(((((((.(((((....((((.............((((....(((((..................))))).)))
).............))))....))))).))))))).)))).)))))))))).))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTAGAGGGACACTGGATGCAGCGGTTCATCGATCTGTTCCCTAGGCCTGATGATGAATGAGTTATAGAATCTTAAGGAAAAAAAATCGAAGGTAGGAGATA
GAGAGAGAAGAGAGAGGCAAAAGGAATCGGTCGATAAACCTCTGCATCCAGCGTTCACCC
dot-bracket secondary structure
).....((((.((((((((((.((((.(((((((.(((((....((((.............((((....(((((..................))))).)))
).............))))....))))).))))))).)))).)))))))))).))))....
SIMILARITIES| miRBase vvi-MIR162: 6.0E-13 PMRD vvi-miR162: 6.0E-13 microPC miR162: 7.0E-31 | UniProt no hits RFAM 2MIR162_2: 2.0E-9 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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