miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000343
species: Cichorium intybus
miRNA family: MIR162
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG

miRNA*
GGATGCAGCGGTTCATCGATC

mismatches: 2
bulges: 0

View larger
pre-miRNA
TAGAGGGACACTGGATGCAGCGGTTCATCGATCTGTTCCCTAGGCCTGATGATGAATGAGTTATAGAATCTTAAGGAAAAAAAATCGAAGGTAGGAGATA
GAGAGAGAAGAGAGAGGCAAAAGGAATCGGTCGATAAACCTCTGCATCCAGCGTTCACCC


dot-bracket secondary structure
.....((((.((((((((((.((((.(((((((.(((((....((((.............((((....(((((..................))))).)))
).............))))....))))).))))))).)))).)))))))))).))))....



SIMILARITIES
miRBase vvi-MIR162: 0.0000000000006

PMRD vvi-miR162: 0.0000000000006

microPC miR162: 7e-31
UniProt no hits

RFAM MIR162_2: 0.000000002
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;