ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-140
source: miRBase, original name: dre-mir-140 (MI0002003)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGTGGTTTTACCCTATGGTAG miRNA* ACCACAGGGTAGAACCACGGAC mismatches: 2 bulges: 0 |
pre-miRNA
GTGTTTGTCTCCTGTGTCCCGTCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACGGGATGTCTGGAGGTG
TCTGC
dot-bracket secondary structure
(((..(..((((.(..(((((((.(((((((((((((.(((((((..(((......)))))))))).))))))))))))).)))))))..)..))))..)
..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH, Science. 309:310-311(2005)., "MicroRNA expression in zebrafish embryonic development"
[2] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
GTGTTTGTCTCCTGTGTCCCGTCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACGGGATGTCTGGAGGTG
TCTGC
dot-bracket secondary structure
(((..(..((((.(..(((((((.(((((((((((((.(((((((..(((......)))))))))).))))))))))))).)))))))..)..))))..)
..)))
SIMILARITIES| miRBase gga-mir-140: 2e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-140: 2e-33 |
Identical with: cfa-mir-140 from miRBase (MNEST026714) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH, Science. 309:310-311(2005)., "MicroRNA expression in zebrafish embryonic development"
[2] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
