ABOUT THIS RECORDspecies: Saccoglossus kowalevskii
miRNA family: let-7
source: miRBase, original name: sko-let-7 (MI0010180)
Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTGTATAGTT miRNA* CTGTACAACTTGCTAACTTTCC mismatches: 2 bulges: 0 |
pre-miRNA
GTTGTTGCCTACTCTCTGGGTGAGGTAGTAGGTTGTATAGTTGAGAGCTATACCATTGGGAGATAACTGTACAACTTGCTAACTTTCCCAGGGGTGGGGA
A
dot-bracket secondary structure
....((.(((((((.(((((.(((.((((((((((((((((((....(((......)))....)))))))))))))))))).))).)))))))))))).)
)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
GTTGTTGCCTACTCTCTGGGTGAGGTAGTAGGTTGTATAGTTGAGAGCTATACCATTGGGAGATAACTGTACAACTTGCTAACTTTCCCAGGGGTGGGGA
A
dot-bracket secondary structure
....((.(((((((.(((((.(((.((((((((((((((((((....(((......)))....)))))))))))))))))).))).)))))))))))).)
)
SIMILARITIES| miRBase bfl-let-7a-2: 0.00000000008 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 0.000000000001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
