miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Saccoglossus kowalevskii



ABOUT THIS RECORD

ID: MNEST034862
species: Saccoglossus kowalevskii
miRNA family: let-7
source: miRBase, original name: sko-let-7 (MI0010180)

Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGGTTGTATAGTT

miRNA*
CTGTACAACTTGCTAACTTTCC

mismatches: 2
bulges: 0

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pre-miRNA
GTTGTTGCCTACTCTCTGGGTGAGGTAGTAGGTTGTATAGTTGAGAGCTATACCATTGGGAGATAACTGTACAACTTGCTAACTTTCCCAGGGGTGGGGA
A


dot-bracket secondary structure
....((.(((((((.(((((.(((.((((((((((((((((((....(((......)))....)))))))))))))))))).))).)))))))))))).)
)



SIMILARITIES
miRBase bfl-let-7a-2: 0.00000000008

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 0.000000000001

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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