ABOUT THIS RECORDspecies: Daphnia pulex
miRNA family: mir-278
source: miRBase, original name: dpu-mir-278 (MI0012234)
Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGTGGGACTTTCGTCCGTGT miRNA* mismatches: 5 bulges: 65 |
pre-miRNA
AAAAAGTTTTCTCTGTTTTCGAGAGACGGAAGTCTTGCACAAGAAATTTAAAAAAACAGGTCGGTGGGACTTTCGTCCGTGTGTGATGCACTTGACAACA
C
dot-bracket secondary structure
.............((((.(((((.(((((((((((..(....((..(((....)))....)).)..)))))))))))..(((.....)))))))).))))
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
AAAAAGTTTTCTCTGTTTTCGAGAGACGGAAGTCTTGCACAAGAAATTTAAAAAAACAGGTCGGTGGGACTTTCGTCCGTGTGTGATGCACTTGACAACA
C
dot-bracket secondary structure
.............((((.(((((.(((((((((((..(....((..(((....)))....)).)..)))))))))))..(((.....)))))))).))))
.
SIMILARITIES| miRBase aga-mir-278: 0.000005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-278: 0.00009 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
