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Species belonging to selected taxon:

Daphnia pulex, Daphnia magna



ABOUT THIS RECORD

ID: MNEST035023
species: Daphnia pulex
miRNA family: mir-278
source: miRBase, original name: dpu-mir-278 (MI0012234)

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGTGGGACTTTCGTCCGTGT

miRNA*


mismatches: 5
bulges: 65

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pre-miRNA
AAAAAGTTTTCTCTGTTTTCGAGAGACGGAAGTCTTGCACAAGAAATTTAAAAAAACAGGTCGGTGGGACTTTCGTCCGTGTGTGATGCACTTGACAACA
C


dot-bracket secondary structure
.............((((.(((((.(((((((((((..(....((..(((....)))....)).)..)))))))))))..(((.....)))))))).))))
.



SIMILARITIES
miRBase aga-mir-278: 0.000005

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-278: 0.00009

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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