miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Lepeophtheirus salmonis, Daphnia pulex, Petrolisthes cinctipes, Penaeus monodon, Artemia franciscana, Caligus rogercresseyi, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Lernaeocera branchialis, Caligus clemensi, Daphnia magna, Gammarus pulex, Calanus finmarchicus, Callinectes sapidus, Fenneropenaeus chinensis



ABOUT THIS RECORD

ID: MNEST035023
species: Daphnia pulex
miRNA family: mir-278
source: miRBase, original name: dpu-mir-278 (MI0012234)

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGTGGGACTTTCGTCCGTGT

miRNA*

mismatches: 5
bulges: 65
View larger
pre-miRNA
 AAAAAGTTTTCTCTGTTTTCGAGAGACGGAAGTCTTGCACAAGAAATTTAAAAAAACAGGTCGGTGGGACTTTCGTCCGTGTGTGATGCACTTGACAACA
C

dot-bracket secondary structure
.............((((.(((((.(((((((((((..(....((..(((....)))....)).)..)))))))))))..(((.....)))))))).))))
.


SIMILARITIES
miRBase aga-mir-278: 0.000005

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-278: 0.00009

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record

references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"



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