ABOUT THIS RECORDspecies: Daphnia pulex
miRNA family: mir-46
source: miRBase, original name: dpu-mir-281 (MI0012236)
Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCATGGAGCTGCTCTCTTTAT miRNA* AAAGAGAGCTATCCGTGAACAGT mismatches: 3 bulges: 2 |
pre-miRNA
AGAGCTTGAGCCGCAAAGAGAGCTATCCGTGAACAGTATGCTGTGTGTGCGAAAATTCACTGTCATGGAGCTGCTCTCTTTATGGACA
dot-bracket secondary structure
.........((((.(((((((((..(((((((.((((......((....)).......)))))))))))...))))))))).))).).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
AGAGCTTGAGCCGCAAAGAGAGCTATCCGTGAACAGTATGCTGTGTGTGCGAAAATTCACTGTCATGGAGCTGCTCTCTTTATGGACA
dot-bracket secondary structure
.........((((.(((((((((..(((((((.((((......((....)).......)))))))))))...))))))))).))).).
SIMILARITIES| miRBase aga-mir-281: 0.000004 PMRD no hits microPC no hits | UniProt no hits RFAM mir-281: 0.00007 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
