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Species belonging to selected taxon:

Daphnia pulex, Daphnia magna



ABOUT THIS RECORD

ID: MNEST035026
species: Daphnia pulex
miRNA family: mir-46
source: miRBase, original name: dpu-mir-281 (MI0012236)

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTCATGGAGCTGCTCTCTTTAT

miRNA*
AAAGAGAGCTATCCGTGAACAGT

mismatches: 3
bulges: 2

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pre-miRNA
AGAGCTTGAGCCGCAAAGAGAGCTATCCGTGAACAGTATGCTGTGTGTGCGAAAATTCACTGTCATGGAGCTGCTCTCTTTATGGACA

dot-bracket secondary structure
.........((((.(((((((((..(((((((.((((......((....)).......)))))))))))...))))))))).))).).


SIMILARITIES
miRBase aga-mir-281: 0.000004

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-281: 0.00007

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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