ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACGGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAG mismatches: 1 bulges: 0 |
pre-miRNA
AAAATGGTGCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGCTTTGATCTATCAGATCTTTGTTTTTATATATAATCTTTGCGGTTCAATAAA
GCTGTGGGAAGATAGAGAAAGGATCAGCA
dot-bracket secondary structure
....((((.((.((((((((.((((((((((((.((((((((((.((((...(((((...)))))...)).............)).)))))))))).)))
))))))))).)))))))).)).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAATGGTGCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGCTTTGATCTATCAGATCTTTGTTTTTATATATAATCTTTGCGGTTCAATAAA
GCTGTGGGAAGATAGAGAAAGGATCAGCA
dot-bracket secondary structure
....((((.((.((((((((.((((((((((((.((((((((((.((((...(((((...)))))...)).............)).)))))))))).)))
))))))))).)))))))).)).))))...
SIMILARITIES| miRBase mtr-MIR396b: 0.0000000004 PMRD lja-miR396: 0.0000000004 microPC miR396: 1e-44 | UniProt no hits RFAM MIR396: 0.000000008 | most similar mature miRNAs |
Identical with: miR396 from microPC (MNEST046087) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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