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Species belonging to selected taxon:

Cichorium intybus, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST000351
species: Cichorium intybus
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCCACGGCTTTCTTGAACTG

miRNA*
GTTCAATAAAGCTGTGGGAAG

mismatches: 1
bulges: 0

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pre-miRNA
AAAATGGTGCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGCTTTGATCTATCAGATCTTTGTTTTTATATATAATCTTTGCGGTTCAATAAA
GCTGTGGGAAG
ATAGAGAAAGGATCAGCA


dot-bracket secondary structure
....((((.((.((((((((.((((((((((((.((((((((((.((((...(((((...)))))...)).............)).)))))))))).)))
))))))))).)
))))))).)).))))...



SIMILARITIES
miRBase mtr-MIR396b: 0.0000000004

PMRD lja-miR396: 0.0000000004

microPC miR396: 1e-44
UniProt no hits

RFAM MIR396: 0.000000008
most similar mature miRNAs

Identical with: miR396 from microPC (MNEST046087)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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