ABOUT THIS RECORDspecies: Apis mellifera
miRNA family: mir-8
source: miRBase, original name: ame-mir-8 (MI0001595)
Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATACTGTCAGGTAAAGATGTC miRNA* CATCTTACCGGGCAGCATTAGA mismatches: 3 bulges: 1 |
pre-miRNA
GGAGTATCTGTTCACATCTTACCGGGCAGCATTAGATTGAAGTTGACCTTCTAATACTGTCAGGTAAAGATGTCGTCAGGATTCC
dot-bracket secondary structure
(((((.((((...((((((((((.(((((.((((((.............)))))).))))).))).)))))))...)))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F, Insect Mol Biol. 19:799-805(2010)., "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera"
GGAGTATCTGTTCACATCTTACCGGGCAGCATTAGATTGAAGTTGACCTTCTAATACTGTCAGGTAAAGATGTCGTCAGGATTCC
dot-bracket secondary structure
(((((.((((...((((((((((.(((((.((((((.............)))))).))))).))).)))))))...)))))))))
SIMILARITIES| miRBase nlo-mir-8: 1e-24 PMRD no hits microPC no hits | UniProt no hits RFAM mir-8: 7e-36 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F, Insect Mol Biol. 19:799-805(2010)., "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera"
