ABOUT THIS RECORDspecies: Apis mellifera
source: miRBase, original name: ame-mir-9c (MI0016202)
Taxonomy by NCBI:
Apis mellifera Apis Apini Apinae Apidae Apoidea Aculeata Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAAGCTAGTTCAGCAAGGCA miRNA* CTTTGGTGAGCTAACTGTATG mismatches: 4 bulges: 0 |
pre-miRNA
GCTGTTTCACACATTTCTACCAAATCGTCCCGTTTATTTTTCTTTGGTGAGCTAACTGTATGGTGAATTGAAAGGCCATAAAGCTAGTTCAGCAAGGCAA
GATATTCGAGACATAGCTTCATGAAATGTGACTGAAATT
dot-bracket secondary structure
...((((((((((((((.........(((.((..((((((.(((((.(((((((.((.((((((..........)))))).)).))))))).))))).))
))))..)).)))..........))))))))..)))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F, Insect Mol Biol. 19:799-805(2010)., "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera"
GCTGTTTCACACATTTCTACCAAATCGTCCCGTTTATTTTTCTTTGGTGAGCTAACTGTATGGTGAATTGAAAGGCCATAAAGCTAGTTCAGCAAGGCAA
GATATTCGAGACATAGCTTCATGAAATGTGACTGAAATT
dot-bracket secondary structure
...((((((((((((((.........(((.((..((((((.(((((.(((((((.((.((((((..........)))))).)).))))))).))))).))
))))..)).)))..........))))))))..)))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 1e-26 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F, Insect Mol Biol. 19:799-805(2010)., "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera"
