ABOUT THIS RECORDspecies: Bombyx mori
miRNA family: mir-99
source: miRBase, original name: bmo-mir-100 (MI0012291)
Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACCCGTAGATCCGAACTTGTG miRNA* CAATATCGATTCTAAAAGTTGC mismatches: 8 bulges: 0 |
pre-miRNA
CATTAAGCCTCTTTAACTGGAACCCGTAGATCCGAACTTGTGCGCTATTGTCGTTGGGGACTCCGTCCAATCGCGCGTAACGATAGCGACTATTCAATGG
CAACAATATCGATTCTAAAAGTTGCCGGCAATCAAAACCAAA
dot-bracket secondary structure
................(((((((...((((..(((..((((..(((((((..((((.((((...)))).((((.......))))..))))....))))))
).))))..)))..))))...))).))))..............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
CATTAAGCCTCTTTAACTGGAACCCGTAGATCCGAACTTGTGCGCTATTGTCGTTGGGGACTCCGTCCAATCGCGCGTAACGATAGCGACTATTCAATGG
CAACAATATCGATTCTAAAAGTTGCCGGCAATCAAAACCAAA
dot-bracket secondary structure
................(((((((...((((..(((..((((..(((((((..((((.((((...)))).((((.......))))..))))....))))))
).))))..)))..))))...))).))))..............
SIMILARITIES| miRBase aae-mir-100: 0.0000004 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 0.000008 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
