ABOUT THIS RECORDspecies: Bombyx mori
miRNA family: mir-252
source: miRBase, original name: bmo-mir-252 (MI0010621)
Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTAAGTACTAGTGCCGCAGGAG miRNA* CCTGCTGCCTAAGTGCTTATCA mismatches: 2 bulges: 2 |
pre-miRNA
AACTAAACCTTGTTCCTAAGTACTAGTGCCGCAGGAGCGTTTTGTAGTATCTCCTGCTGCCTAAGTGCTTATCAATGAGGGTTTA
dot-bracket secondary structure
.......(((..((..((((((((((.((.(((((((.((........))))))))).)))).))))))))..))..))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Griffiths-Jones S, Unpublished (2009).,
[2] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
AACTAAACCTTGTTCCTAAGTACTAGTGCCGCAGGAGCGTTTTGTAGTATCTCCTGCTGCCTAAGTGCTTATCAATGAGGGTTTA
dot-bracket secondary structure
.......(((..((..((((((((((.((.(((((((.((........))))))))).)))).))))))))..))..))).....
SIMILARITIES| miRBase ngi-mir-252: 0.00000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-252: 7e-42 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Griffiths-Jones S, Unpublished (2009).,
[2] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
