ABOUT THIS RECORDspecies: Bombyx mori
source: miRBase, original name: bmo-mir-1000 (MI0013533)
Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATATTGTCCTGTCACAGCAGT miRNA* TGCTGCGTCTGGACAAGCCGG mismatches: 6 bulges: 0 |
pre-miRNA
GGCGCGTCGCGGCCATATTGTCCTGTCACAGCAGTACTTGGAAGCTACTGCTGCGTCTGGACAAGCCGGCCGCGGCGCCGCC
dot-bracket secondary structure
((((((((((((((...((((((.(.(.((((((((((....)).)))))))).).).))))))...)))))))))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR, SOLID
references
[1] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"
[2] Huang Y, Zou Q, Tang SM, Wang LG, Shen XJ, Mol Biol Rep. 37:3171-3176(2010)., "Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.)"
GGCGCGTCGCGGCCATATTGTCCTGTCACAGCAGTACTTGGAAGCTACTGCTGCGTCTGGACAAGCCGGCCGCGGCGCCGCC
dot-bracket secondary structure
((((((((((((((...((((((.(.(.((((((((((....)).)))))))).).).))))))...)))))))))).))))
SIMILARITIES| miRBase aga-mir-1000: 0.0000002 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR, SOLID
references
[1] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"
[2] Huang Y, Zou Q, Tang SM, Wang LG, Shen XJ, Mol Biol Rep. 37:3171-3176(2010)., "Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.)"
