ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIRf209
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGGTCCGAGCCCTGGGTTT miRNA* ATCAAAGGGTATGCGGCCTGGTG mismatches: 3 bulges: 2 |
pre-miRNA
CCAAAGCATTAAATCAAAGGGTATGCGGCCTGGTGTATCATTGAGGCCAGGTACTCCAGTGGAGGAAGTTTTTCCCCCTGGTGGAAAGCAGAAAATCCCG
GGTAGAATTGGTTTCTTGGTGATTGACAGGTCCGAGCCCTGGGTTTTTTGGGTGG
dot-bracket secondary structure
(((...((..(((((..(((((.((.((((((...(((((..((((((((.((((((((.((.((((....)))))))))).(((..........)))..
))))...)))))))).))))).....)))))))).))))).)))))..))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCAAAGCATTAAATCAAAGGGTATGCGGCCTGGTGTATCATTGAGGCCAGGTACTCCAGTGGAGGAAGTTTTTCCCCCTGGTGGAAAGCAGAAAATCCCG
GGTAGAATTGGTTTCTTGGTGATTGACAGGTCCGAGCCCTGGGTTTTTTGGGTGG
dot-bracket secondary structure
(((...((..(((((..(((((.((.((((((...(((((..((((((((.((((((((.((.((((....)))))))))).(((..........)))..
))))...)))))))).))))).....)))))))).))))).)))))..))..)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9SE42|RPE1_ORYSJ: 0.0000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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