ABOUT THIS RECORDspecies: Culex quinquefasciatus
miRNA family: bantam
source: miRBase, original name: cqu-bantam (MI0013610)
Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGGTTTTCATTTTCGATCTGAC miRNA* GAGATCATTTTGAAAGCTGATT mismatches: 6 bulges: 1 |
pre-miRNA
AGAACCGGTTTTCATTTTCGATCTGACTTATTTGATTTAACAGAGTGAGATCATTTTGAAAGCTGATTTT
dot-bracket secondary structure
.....(((((((((.....(((((.((((.............)))).)))))....))))))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
AGAACCGGTTTTCATTTTCGATCTGACTTATTTGATTTAACAGAGTGAGATCATTTTGAAAGCTGATTTT
dot-bracket secondary structure
.....(((((((((.....(((((.((((.............)))).)))))....))))))))).....
SIMILARITIES| miRBase aae-bantam: 4e-30 PMRD no hits microPC no hits | UniProt no hits RFAM bantam: 5e-33 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
