miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Drosophila melanogaster, Bombyx mori, Aedes aegypti, Culex quinquefasciatus, Anopheles gambiae, Dendroctonus ponderosae, Nasonia vitripennis, Drosophila simulans, Glossina morsitans morsitans, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Phlebotomus papatasi, Drosophila sechellia, Drosophila auraria, Antheraea assama, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Nasonia giraulti, Bombus terrestris, Drosophila willistoni, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Spodoptera littoralis, Samia cynthia ricini, Drosophila mojavensis, Danaus plexippus, Cochliomyia hominivorax, Anopheles stephensi, Diabrotica virgifera virgifera, Haematobia irritans irritans, Papilio xuthus, Polypedilum vanderplanki, Ostrinia nubilalis, Trichoplusia ni, Drosophila yakuba, Epiphyas postvittana, Apis mellifera, Tribolium castaneum

ABOUT THIS RECORD

ID: MNEST036899
species: Drosophila pseudoobscura
miRNA family: mir-1
source: miRBase, original name: dps-mir-1 (MI0001289)

Taxonomy by NCBI:
Drosophila pseudoobscura pseudoobscura subgroup obscura group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGGAATGTAAAGAAGTATGGAG

miRNA*
CCATGCTTCCTTGCATTCAATA

mismatches: 2
bulges: 0

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pre-miRNA
GCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAACATAAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAG

dot-bracket secondary structure
(((...((..((((((((((((.((((((((.(((((..........)).))).)))))))).))))))))))))....)).)))...

SIMILARITIES

miRBase dpe-mir-1: 3e-44

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-1: 2e-27

Identical with: dpe-mir-1 from miRBase (MNEST036824)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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