ABOUT THIS RECORDspecies: Tribolium castaneum
miRNA family: mir-1175
source: miRBase, original name: tca-mir-1175 (MI0016357)
Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGATTCAACTCCTCCATCTC miRNA* GTGGAGCAGTGGTCTCTTCACT mismatches: 5 bulges: 2 |
pre-miRNA
CGCTTTGATCGAGCTCTGTAAAGTAAGTGGAGCAGTGGTCTCTTCACTTGGTTTTTATAGTGAGATTCAACTCCTCCATCTCATTTTTTGAGCTCGTTTA
CAACG
dot-bracket secondary structure
.....(((.(((((((...(((((.(((((((.(((.(..(((.((((..........)))))))..).))).))))).)).)))))..))))))).)))
.....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
CGCTTTGATCGAGCTCTGTAAAGTAAGTGGAGCAGTGGTCTCTTCACTTGGTTTTTATAGTGAGATTCAACTCCTCCATCTCATTTTTTGAGCTCGTTTA
CAACG
dot-bracket secondary structure
.....(((.(((((((...(((((.(((((((.(((.(..(((.((((..........)))))))..).))).))))).)).)))))..))))))).)))
.....
SIMILARITIES| miRBase tca-mir-1175: 6e-55 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID
references
[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"
