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Species belonging to selected taxon:

Dendroctonus ponderosae, Diabrotica virgifera virgifera, Tribolium castaneum



ABOUT THIS RECORD

ID: MNEST037831
species: Tribolium castaneum
miRNA family: mir-1175
source: miRBase, original name: tca-mir-1175 (MI0016357)

Taxonomy by NCBI:
Tribolium castaneum Tribolium Tenebrionidae Tenebrionoidea Cucujiformia Polyphaga Coleoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGATTCAACTCCTCCATCTC

miRNA*
GTGGAGCAGTGGTCTCTTCACT

mismatches: 5
bulges: 2

View larger
pre-miRNA
CGCTTTGATCGAGCTCTGTAAAGTAAGTGGAGCAGTGGTCTCTTCACTTGGTTTTTATAGTGAGATTCAACTCCTCCATCTCATTTTTTGAGCTCGTTTA
CAACG


dot-bracket secondary structure
.....(((.(((((((...(((((.(((((((.(((.(..(((.((((..........)))))))..).))).))))).)).)))))..))))))).)))
.....



SIMILARITIES
miRBase tca-mir-1175: 6e-55

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references

[1] Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S, Genome Biol Evol. 2:686-696(2010)., "Functional shifts in insect microRNA evolution"




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